R/reproducibilityReceipt.R
reproducibilityReceipt.RdInsert git repository and R session info into Rmarkdown documents. Based on suggestions in a Twitter thread by Miles McBain (https://twitter.com/MilesMcBain/status/1263272935197782016?s=20).
reproducibilityReceipt(title = "Reproducibility receipt")Header title for the inserted details section.
Add the following to your Rmd files:
-----
<details closed>
<summary> <span title='Click to Expand'> Reproducibility receipt </span> </summary>```r$`Git repository`
Local: development /home/achubaty/Documents/GitHub/PredictiveEcology/pemisc
Remote: development @ origin (ssh://git@github.com/PredictiveEcology/pemisc.git)
Head: [e977ca0] 2022-09-13: fixing GHA website deploy$`External spatial libraries`
GEOS GDAL proj.4 GDAL_with_GEOS USE_PROJ_H
"3.9.1" "3.3.2" "7.2.1" "true" "true"
PROJ
"7.2.1" $`R session info`
- Session info ---------------------------------------------------------------
setting value
version R version 4.2.1 (2022-06-23)
os Ubuntu 20.04.5 LTS
system x86_64, linux-gnu
ui X11
language en_CA:en
collate C
ctype en_CA.UTF-8
tz America/Edmonton
date 2022-09-12
pandoc 2.5 @ /usr/bin/pandoc- Packages -------------------------------------------------------------------
! package * version date (UTC) lib source
amc 0.2.1 2021-09-28 [1] Github (achubaty/amc@15c5229)
base64enc 0.1-4 2021-06-18 [1] local
bit 4.0.4 2020-08-04 [1] RSPM (R 4.2.0)
bit64 4.0.5 2020-08-30 [1] RSPM (R 4.2.0)
bitops 1.0-7 2021-04-24 [1] RSPM (R 4.2.0)
blob 1.2.3 2022-04-10 [1] RSPM (R 4.2.0)
cachem 1.0.6 2021-08-19 [1] RSPM (R 4.2.0)
callr 3.7.2 2022-08-22 [1] RSPM
class 7.3-20 2022-01-13 [4] CRAN (R 4.1.2)
classInt 0.4-7 2022-06-10 [1] RSPM (R 4.2.0)
cli 3.4.0 2022-09-08 [1] RSPM (R 4.2.0)
clipr 0.8.0 2022-02-22 [1] RSPM (R 4.2.0)
codetools 0.2-18 2020-11-04 [4] CRAN (R 4.0.3)
commonmark 1.8.0 2022-03-09 [1] RSPM (R 4.2.0)
crayon 1.5.1 2022-03-26 [1] RSPM (R 4.2.0)
data.table 1.14.2 2021-09-27 [1] RSPM (R 4.2.0)
DBI 1.1.3 2022-06-18 [1] RSPM (R 4.2.0)
desc 1.4.2 2022-09-08 [1] RSPM (R 4.2.0)
details 0.3.0 2022-03-27 [1] RSPM (R 4.2.0)
devtools 2.4.4 2022-07-20 [1] RSPM (R 4.2.0)
digest 0.6.29 2021-12-01 [1] RSPM (R 4.2.0)
dismo 1.3-8 2022-07-18 [1] RSPM (R 4.2.0)
dplyr 1.0.10 2022-09-01 [1] RSPM (R 4.2.0)
e1071 1.7-11 2022-06-07 [1] RSPM (R 4.2.0)
ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.2.0)
evaluate 0.16 2022-08-09 [1] RSPM (R 4.2.0)
fansi 1.0.3 2022-03-24 [1] RSPM (R 4.2.0)
fasterize 1.0.3 2020-07-27 [1] RSPM (R 4.2.0)
fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.2.0)
fpCompare 0.2.4 2022-08-15 [1] RSPM (R 4.2.0)
fs 1.5.2 2021-12-08 [1] RSPM (R 4.2.0)
generics 0.1.3 2022-07-05 [1] RSPM (R 4.2.0)
git2r 0.30.1 2022-03-16 [1] RSPM (R 4.2.0)
glue 1.6.2 2022-02-24 [1] RSPM (R 4.2.0)
here 1.0.1 2020-12-13 [1] RSPM (R 4.2.0)
htmltools 0.5.3 2022-07-18 [1] RSPM (R 4.2.0)
htmlwidgets 1.5.4 2021-09-08 [1] RSPM (R 4.2.0)
httpuv 1.6.5 2022-01-05 [1] RSPM (R 4.2.0)
httr 1.4.4 2022-08-17 [1] RSPM (R 4.2.0)
KernSmooth 2.23-20 2021-05-03 [4] CRAN (R 4.0.5)
knitr 1.40 2022-08-24 [1] RSPM
later 1.3.0 2021-08-18 [1] RSPM (R 4.2.0)
lattice 0.20-45 2021-09-22 [4] CRAN (R 4.2.0)
lifecycle 1.0.1 2021-09-24 [1] RSPM (R 4.2.0)
lobstr 1.1.2 2022-06-22 [1] RSPM (R 4.2.0)
magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.2.0)
memoise 2.0.1 2021-11-26 [1] RSPM (R 4.2.0)
mime 0.12 2021-09-28 [1] RSPM (R 4.2.0)
miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.2.0)
VP pemisc * 0.0.4 2022-09-09 [?] Github (PredictiveEcology/pemisc@bebe4ec) (on disk 0.0.3.9007)
peutils 0.1.0 2021-06-01 [1] Github (PredictiveEcology/peutils@d40d97c)
pillar 1.8.1 2022-08-19 [1] RSPM
pkgbuild 1.3.1 2021-12-20 [1] RSPM (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0)
pkgload 1.3.0 2022-06-27 [1] RSPM (R 4.2.0)
png 0.1-8 2021-06-18 [1] local
prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0)
processx 3.7.0 2022-07-07 [1] RSPM (R 4.2.0)
profvis 0.3.7 2020-11-02 [1] RSPM (R 4.2.0)
promises 1.2.0.1 2021-02-11 [1] RSPM (R 4.2.0)
proxy 0.4-27 2022-06-09 [1] RSPM (R 4.2.0)
ps 1.7.1 2022-06-18 [1] RSPM (R 4.2.0)
purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0)
R6 2.5.1 2021-08-19 [1] RSPM (R 4.2.0)
raster 3.5-29 2022-08-14 [1] CRAN (R 4.2.1)
Rcpp 1.0.9 2022-07-08 [1] RSPM (R 4.2.0)
RCurl 1.98-1.8 2022-07-30 [1] RSPM (R 4.2.0)
remotes 2.4.2 2021-11-30 [1] RSPM (R 4.2.0)
reproducible 1.2.10.9000 2022-09-09 [1] Github (PredictiveEcology/reproducible@d683a29)
Require 0.1.1.9009 2022-09-09 [1] local
rgdal 1.5-32 2022-05-09 [1] CRAN (R 4.2.0)
rlang 1.0.5 2022-08-31 [1] RSPM (R 4.2.0)
roxygen2 7.2.1 2022-07-18 [1] RSPM (R 4.2.0)
rprojroot 2.0.3 2022-04-02 [1] RSPM (R 4.2.0)
RSQLite 2.2.16 2022-08-17 [1] RSPM (R 4.2.0)
rstudioapi 0.14 2022-08-22 [1] RSPM
sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.2.0)
sf 1.0-8 2022-07-14 [1] CRAN (R 4.2.1)
shiny 1.7.2 2022-07-19 [1] RSPM (R 4.2.0)
sp 1.5-0 2022-06-05 [1] RSPM
stringi 1.7.8 2022-07-11 [1] RSPM (R 4.2.0)
stringr 1.4.1 2022-08-20 [1] RSPM
terra 1.6-7 2022-08-07 [1] CRAN (R 4.2.1)
tibble 3.1.8 2022-07-22 [1] RSPM (R 4.2.0)
tidyselect 1.1.2 2022-02-21 [1] RSPM (R 4.2.0)
units 0.8-0 2022-02-05 [1] RSPM (R 4.2.0)
urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.2.0)
usethis 2.1.6 2022-05-25 [1] RSPM (R 4.2.0)
utf8 1.2.2 2021-07-24 [1] RSPM (R 4.2.0)
vctrs 0.4.1 2022-04-13 [1] RSPM (R 4.2.0)
withr 2.5.0 2022-03-03 [1] RSPM (R 4.2.0)
xfun 0.32 2022-08-10 [1] RSPM (R 4.2.0)
xml2 1.3.3 2021-11-30 [1] RSPM (R 4.2.0)
xtable 1.8-4 2019-04-21 [1] RSPM (R 4.2.0) [1] /home/achubaty/R/x86_64-pc-linux-gnu-library/4.2
[2] /usr/local/lib/R/site-library
[3] /usr/lib/R/site-library
[4] /usr/lib/R/library V -- Loaded and on-disk version mismatch.
P -- Loaded and on-disk path mismatch.------------------------------------------------------------------------------$Timestamp
[1] "2022-09-12 23:47:22 MDT"```</details>
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